BtaEX6014600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15434129-15435064:+
Coord C1 exon
chr3:15434129-15434257
Coord A exon
chr3:15434694-15434853
Coord C2 exon
chr3:15434963-15435064
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTCTGACCCTTAGGTA
3' ss Score
10.11
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCGACAGAACAATTGGCCTCCTCTACCTTCTTTTTGCCCGGTTCAGCCCTGCTTTTTCCAGGACATCTCCATGGAGATCCCCCAAGAATTTCAGAAGACAGTATCCACCATGTACTACCTCTGGATGT
Seq A exon
GTAGCACTCTGGCTCTTCTTTTGAATTTTCTTGCCTGCCTGGCCAGCTTCTGTGTGGAGACCAGCAATGGCTCAGGCTTTGGGCTCTCTATCCTCTGGATCCTCCTCTTCACTCCCTGCTCCTTCGTCTGCTGGTATCGCCCCATGTACAAGGCTTTCCG
Seq C2 exon
GAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATTTTCTTCGTCCAGGATGTTCTGTTTGTCCTCCAGGCCATTGGCATCCCAGGTTGGGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF049918=LicD=PD(34.5=88.6),PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGAACAATTGGCCTCCT
R:
CCAACCTGGGATGCCAATGG
Band lengths:
221-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]