MmuEX0041136 @ mm9
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:88984174-88985198:+
Coord C1 exon
chr3:88984174-88984302
Coord A exon
chr3:88984651-88984810
Coord C2 exon
chr3:88985097-88985198
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTCTCTGCCCCTCAGGCA
3' ss Score
9.76
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CTCGACAGAACAACTGGCCTCCCCTACCGTCTTTTTGCCCTGTAAAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATACCCCAAGAATTTCAGAAGACGGTGTCCACCATGTACTACCTCTGGATGT
Seq A exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGCTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
Seq C2 exon
GAGTGATAGTTCATTCAATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGCATCCCAGGGTGGGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049-'7-9,'7-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF049918=LicD=PD(35.5=88.6),PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(54.6=100),PF041448=SCAMP=PU(2.0=1.9)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAACTGGCCTCCCCTA
R:
CCACCCTGGGATGCCAATG
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: