RnoEX6010268 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188492517-188493894:+
Coord C1 exon
chr2:188492517-188492645
Coord A exon
chr2:188493020-188493179
Coord C2 exon
chr2:188493793-188493894
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTGTCACTTTGCCCCTCAGGCA
3' ss Score
9.19
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CTCGACAGAACAACTGGCCTCCCCTGCCGTCTTTTTGCCCTGTGCAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATCCCCCAAGAATTTCAGAAGACAGTGTCTACCATGTACTACCTCTGGATGT
Seq A exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGGTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTTACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
Seq C2 exon
GAGTGATAGTTCATTCAATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGTATCCCAGGTTGGGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'28-45,'28-42,30-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAACTGGCCTCCCCT
R:
GGATACCAATGGCCTGGAGGA
Band lengths:
210-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]