BtaEX6014734 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007517 | CHRNB2
Description
cholinergic receptor, nicotinic, beta 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1962]
Coordinates
chr3:16065243-16066151:-
Coord C1 exon
chr3:16066006-16066151
Coord A exon
chr3:16065767-16065811
Coord C2 exon
chr3:16065243-16065352
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCAGCTTCTCTTTCCTGCAGCAT
3' ss Score
8.57
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GAGTCTGGGGTACAGACACAGAAGAGCGGCTGGTAGAGCATCTCCTGGATCCTTCCCGCTACAACAAACTTATCCGCCCAGCCACCAATGGCTCTGAGCTGGTGACAGTACAGCTCATGGTGTCACTGGCCCAGCTCATCAGTGTG
Seq A exon
CATGAGCGGGAGCAGATCATGACCACCAATGTCTGGCTGACTCAG
Seq C2 exon
GAGTGGGAGGATTATCGCCTCACCTGGAAGCCTGAGGAATTTGACAACATGAAGAAAGTTCGGCTCCCTTCCAAACACATCTGGCTCCCAGATGTGGTCCTATACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007517-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTTCCCGCTACAACA
R:
ATTCCTCAGGCTTCCAGGTGA
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]