MmuEX6072204 @ mm10
Exon Skipping
Gene
ENSMUSG00000027950 | Chrnb2
Description
cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal) [Source:MGI Symbol;Acc:MGI:87891]
Coordinates
chr3:89762399-89763365:-
Coord C1 exon
chr3:89763220-89763365
Coord A exon
chr3:89763010-89763054
Coord C2 exon
chr3:89762399-89762508
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCTGCCCTGTTTTCCTGCAGCAC
3' ss Score
10.14
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGGTTTTGGGTACTGACACAGAGGAGCGGCTGGTGGAGCATCTCTTGGATCCTTCCCGCTATAACAAGCTGATCCGTCCAGCTACTAATGGCTCTGAGCTGGTGACTGTACAGCTCATGGTATCATTGGCACAGCTCATCAGTGTG
Seq A exon
CACGAGCGGGAGCAGATCATGACCACCAACGTCTGGCTGACCCAG
Seq C2 exon
GAGTGGGAAGATTATCGCCTCACATGGAAGCCTGAGGATTTCGACAATATGAAGAAAGTCCGACTCCCTTCTAAGCACATCTGGCTCCCAGATGTGGTTCTATACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027950-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTGACTGTACAGCTCA
R:
TGGGAGCCAGATGTGCTTAGA
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types