DreEX0021718 @ danRer10
Exon Skipping
Gene
ENSDARG00000101677 | chrnb4
Description
cholinergic receptor, nicotinic, beta 4 (neuronal) [Source:ZFIN;Acc:ZDB-GENE-120809-1]
Coordinates
chr18:50632753-50633481:+
Coord C1 exon
chr18:50632753-50632898
Coord A exon
chr18:50633151-50633195
Coord C2 exon
chr18:50633372-50633481
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTTTCCAGAAT
3' ss Score
9.62
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGGTGTGTGTGCAGACTCAGAGGAGCGTCTGATGAACTGGCTGCTGGGTAAACATCGCTACAATAAACTGATCCGGCCGGCGCTGAACCGCACCGAGAGAGTGACCGTCCTGCTGCAGGTGTCTCTGGCCCAGCTCATCAGTGTG
Seq A exon
AATGAAAGAGAGCAGATCATGACCACAAACGTCTGGCTCACTCAG
Seq C2 exon
AACTGGAACGATTATCGCCTGTCGTGGGACCCGGCGGAGTACGAGGGCATCGACAAGCTGCGGATTCCCTCCAGACACATCTGGCTGCCTGATATAGTGCTGTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101677-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
A:
PF0293118=Neur_chan_LBD=FE(7.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGCTGCTGGGTAAACA
R:
GTCCCACGACAGGCGATAATC
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]