BtaEX6077439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003132 | CHRNB4
Description
Bos taurus cholinergic receptor, nicotinic, beta 4 (CHRNB4), mRNA. [Source:RefSeq mRNA;Acc:NM_174517]
Coordinates
chr21:31525271-31532212:-
Coord C1 exon
chr21:31532064-31532212
Coord A exon
chr21:31525484-31525528
Coord C2 exon
chr21:31525271-31525380
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGCTGCATTTCCCTCCCCAGAAT
3' ss Score
8.47
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGACTGCCGTGTGGCCAATGCAGAGGAGAAGCTCATGGACGACCTTCTGAACAAAACCCGCTACAACAACTTGATCCGCCCAGCCACCAGCTCCTCCCAGCTCATCTCCATCCAGCTGCAGCTCTCCCTGGCCCAGCTCATCAGCGTG
Seq A exon
AATGAGCGAGAACAGATCATGACCACCAACATCTGGCTGAAACAG
Seq C2 exon
GAATGGACAGACTACCGCCTGGCCTGGAACAGCTCTCGCTATGAGGGTGTGAACATCCTGAGGATCCCCGCAAATCGCGTCTGGCTGCCTGACATCGTGCTTTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003132-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=82.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCCAGCTCATCTCCAT
R:
ATTTGCGGGGATCCTCAGGAT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]