RnoEX0021231 @ rn6
Exon Skipping
Gene
ENSRNOG00000014427 | Chrnb4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:RGD Symbol;Acc:2351]
Coordinates
chr8:59616939-59624338:-
Coord C1 exon
chr8:59624190-59624338
Coord A exon
chr8:59617151-59617195
Coord C2 exon
chr8:59616939-59617048
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCCCCATTTCCCTCCCCAGAAT
3' ss Score
10.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGACTGCCGCCTGGCCAACGCAGAGGAGAAGCTGATGGATGACCTCCTGAACAAAACCCGGTACAACAACCTGATCCGCCCAGCCACCAGCTCCTCTCAGCTCATCTCCATCCGCCTGGAGCTATCACTGTCCCAGCTCATCAGTGTG
Seq A exon
AATGAGCGAGAACAGATCATGACCACCAGCATCTGGCTGAAACAG
Seq C2 exon
GAATGGACTGACTACCGCCTGGCCTGGAACAGCTCCTGCTATGAAGGGGTGAACATTCTGAGGATCCCCGCAAAGCGTGTCTGGTTGCCTGACATCGTGTTGTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014427-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=82.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGCTATCACTGTCCCA
R:
AACACGATGTCAGGCAACCAG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]