GgaEX6007413 @ galGal4
Exon Skipping
Gene
ENSGALG00000003005 | CHRNB4
Description
neuronal acetylcholine receptor subunit beta-4 precursor [Source:RefSeq peptide;Acc:NP_990150]
Coordinates
chr10:3108967-3110637:+
Coord C1 exon
chr10:3108967-3109112
Coord A exon
chr10:3110358-3110402
Coord C2 exon
chr10:3110528-3110637
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTATGTCTTCTCCTGCAGAAC
3' ss Score
11.62
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAGCACTGCAGCAGATGCTGAGGAAAAGCTAATGAACCACCTACTGAGTCCTGACAGGTACAACAAGTTAATTCGCCCAGCTGTCAACTCATCCCAGTTGGTATCTATAGAACTGCAGGTTTCCCTGGCACAGCTCATCAGTGTG
Seq A exon
AACGAACGAGAGCAGATCATGACTACAAATGTCTGGCTAAACCAG
Seq C2 exon
GAGTGGATTGATTATCGTTTGGCTTGGAAACCTTCTGACTACGAAGGAATAAATATGCTGAGAATACCTGCAAAACATATCTGGCTCCCAGACATTGTGCTTTACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTACTGAGTCCTGACA
R:
AGAAGGTTTCCAAGCCAAACGA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]