BtaEX6015195 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20191331-20192472:-
Coord C1 exon
chr3:20192336-20192472
Coord A exon
chr3:20191771-20191975
Coord C2 exon
chr3:20191331-20191503
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTAACTCTGTTTCCCCCCAGAGC
3' ss Score
10.68
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTCAGGGTTCTCAGCGCTGTGAGCTGAACTGCCGTCCCCGTGGCTTCCGCTTCTATGTCCGTCACACCCAAAAGGTCCAGGACGGGACCCTGTGTCAGCCTGGATCCCTGGACATCTGTGTGGCTGGACGCTGTCTG
Seq A exon
AGCCCTGGCTGTGATGGCATCCTTGGCTCTGGCCGGCATCCAGATGGCTGTGGCGTCTGTGGGGGTGATGATTCTACCTGTCGCCTCGTCTTGGGGAACCTCACTGAGCGGGGTGGCCCTCTGGGTTATCAGAAGATCTTGTCCATTCCTGCCGGGGCCTCCCGACTCCAGATTGCCCAGCTCCGGCCCAGCTCCAACTACCTTG
Seq C2 exon
CACTTCGAGGTCCTGGGGGCCGGTCCATCATCAATGGAAACTGGGCTGTGGATCCCCCTGGGTCCTATACCGCCGGCGGGACTGTCTTCCGGTACAACCGTCCTCCCCGGGAGGAGGGCGCTGGGGAGAGCCTGTCCGCAGAAGGCCCCACCACCCAGCCCGTGGATGTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(35.3=59.4)
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCTGAACTGCCGTC
R:
TAGACATCCACGGGCTGGG
Band lengths:
293-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]