RnoEX0006933 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197808314-197809391:-
Coord C1 exon
chr2:197809255-197809391
Coord A exon
chr2:197808664-197808833
Coord C2 exon
chr2:197808314-197808486
Length
170 bp
Sequences
Splice sites
3' ss Seq
GGGATCCTTGGCTCTGGCAGGCG
3' ss Score
4.15
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TTCAAGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTTTATGTCCGTCACACTGAAAAGGTGCAGGATGGGACCCTGTGTCAGCCTGGATCCCTAGACATTTGTGTGGCTGGACACTGCCTG
Seq A exon
GCGTCCGGATGGCTGTGGAGTCTGTGGGGGTGACGGCTCTACCTGCCGTCTCGTTTCGGGGAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATTCCTGCGGGAGCCTCCCATCTTCGCATTTCCCAGTTCCGACCCAGTTCCAATTACCTTG
Seq C2 exon
CACTTCGAGGGCCTGGTGGCCGCTCCATTATCAATGGGAACTGGGCTGTAGATCCTCCAGGATCCTACGCGGCCGTCGGGACCGTCTTCCAGTATAACCGTCCTCCTCGGGAGGAGGGCAAGGGGGAGACTCTGTCAGCAGAAGGCCCTACCACCCAGCCTGTGGATGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-'11-18,'11-17,12-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(35.3=59.4)
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTCACACTGAAAAGGTGC
R:
ATAGACATCCACAGGCTGGGT
Band lengths:
253-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]