BtaEX6015201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20188469-20189421:-
Coord C1 exon
chr3:20189245-20189421
Coord A exon
chr3:20188743-20188949
Coord C2 exon
chr3:20188469-20188648
Length
207 bp
Sequences
Splice sites
3' ss Seq
CACACTCTGCTTCCCAACAGTGC
3' ss Score
9.1
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGCTCTGTGCGATGCGGGCGCGGTCAGAGGAGCCGGCAGGTCCGCTGTGTCGGCAACAACGGGGATGAAGTGAGTGAGCAGGAGTGCGCCTCAGGGCCCCCGCGGCCCCCCAGCAGAGAGGCCTGCGACATGGGGCCCTGCACCACGGCCTGGTTCCACAGCGACTGGAGCTCCAAG
Seq A exon
TGCTCAGCGGAGTGTGGGACGGGAATCCAGAGACGTTCTGTGGTCTGCCTTGGGAGTGGGGAGGCCCACGGGATAAGCCAGGAGGAAGCAGGGGCAGGAGCCGGTGAGCAGACCTGTGCACCCGGAAGCCGGCCCCCTGACATGCGTGCCTGCAGTCTGGGGCCCTGTGAAGTGTCGTGGTGCTGGTACACCGGGCCCTGGGCAGAG
Seq C2 exon
TGCTCCTCAGAGTGCGGCTCTGGCACACAGCGTAGAGACGTCATCTGTGTGTCCAAACTGGGGACTGAGTTCAACGTGACTTCTCCTAGCAACTGTTCCCACCTTCCCAGGCCCCCTGCCCTGCAGCCCTGTCAAGGGCAGGACTGCCAGGACCGGTGGTTTTCTACACCCTGGAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.6=78.0)
A:
PF0009014=TSP_1=PU(10.7=8.7)
C2:
PF0009014=TSP_1=PD(85.7=80.0),PF0009014=TSP_1=PU(11.8=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAACGGGGATGAAGTGA
R:
CAGGGTGTAGAAAACCACCGG
Band lengths:
298-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]