MmuEX6072584 @ mm9
Exon Skipping
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95481451-95483687:-
Coord C1 exon
chr3:95483511-95483687
Coord A exon
chr3:95481731-95481928
Coord C2 exon
chr3:95481451-95481630
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTCACTCTCCCTCCCAACAGTGC
3' ss Score
10.63
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
TGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGACAAGCAGGAGTGTGCTTCAGGGCCCCCGCCGCCCCCCAGCAGAGAGGCCTGTGACATGGGCCCCTGCACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAAG
Seq A exon
TGCTCAGCCGAGTGCGGGACAGGAATCCAGAGACGCGCTGTGGTCTGCCTTAGGAGTGGGGAGACCCTTCAGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCGATATGCGTGCCTGCAGTTTAGGGCCCTGTGAGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTGAG
Seq C2 exon
TGTTCCTCGGAGTGTGGGTCTGGCACACAACACAGAGACATTATCTGTGTGTCCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAGCAACTGTTCCCACCTACCCAGGCCGCCTGCCCTGCAGCCCTGTCAGGGGCAGGCCTGTGAGGACAAATGGTTCTCCACTCTCTGGAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-'16-22,'16-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.6=78.0)
A:
PF0009014=TSP_1=PU(10.7=9.1)
C2:
PF0009014=TSP_1=PD(85.7=80.0),PF0009014=TSP_1=PU(11.8=10.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGTGTTGGCAGTAATGG
R:
GTAGGTGGGAACAGTTGCTGG
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: