RnoEX0006939 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197804826-197806833:-
Coord C1 exon
chr2:197806657-197806833
Coord A exon
chr2:197805106-197805303
Coord C2 exon
chr2:197804826-197805005
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCCACTCTCCCTCCCAACAGTGC
3' ss Score
10.44
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
TGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTGCGGTGTGTTGGAAGTAATGGCCATGAGGTGGGCAAGCAGGAGTGTGCTTCCGGGCCCCCGCCACCTCCCAGCAGAGAGGCCTGTGACATGGGCCCCTGTACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAAG
Seq A exon
TGCTCAGCCGAGTGTGGGACAGGCATCCAGAGACGCGCTGTGGTCTGCCTTAGGAGTGGGGAGACCCTTCAGGGGGACCCAGAAGCAGGAAGCACTGAGCAGGGTTGCCCTCTCAGAAGCCGCCCTCCTGACATGCGTGCTTGCAGTTTAGGGCCCTGTGAAAAGACATGGCGCTGGTACACCGGGCCCTGGAGTGAG
Seq C2 exon
TGCTCCTCTGAGTGTGGGTCTGGCACACAGCACAGAGACATTATCTGTGTATCCAAACTGGGGACCAAATTCAATGTGACTTCTCCCAGCAACTGCTCCCACCTACCCAGGCCTCCTGCCCTGCAGCCCTGTCAGGGCCAGGCCTGTGAGGACCAATGGTTCTCTACTCTCTGGAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.6=78.0)
A:
PF0009014=TSP_1=PU(10.7=9.1)
C2:
PF0009014=TSP_1=PD(85.7=80.0),PF0009014=TSP_1=PU(11.8=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGCGGTGTGTTGGAAGT
R:
CTGGGTAGGTGGGAGCAGTT
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]