BtaEX6015460 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007909 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr3:23440864-23452281:+
Coord C1 exon
chr3:23440864-23441009
Coord A exon
chr3:23442588-23442701
Coord C2 exon
chr3:23452162-23452281
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCTTTTTGTGTGCAGGCT
3' ss Score
10.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATACAAGTGCCTCTGTGATGCAGGCTGGGTTGGCATCAACTGTGAAGTGGACAAAAATGAATGTCTTTCTAATCCATGCCAGAACGGGGGAACTTGTGACAATCTGGTGAATGGATACAGGTGCACTTGCAAGAAGGGCTTTAAAG
Seq A exon
GCTATAACTGCCAGGTGAATATTGATGAATGTGCTTCAAATCCATGTCTGAACCAAGGAACCTGCCTTGATGACGTAAGCGGTTATACTTGCCACTGTGTGCTGCCATACACAG
Seq C2 exon
GCAAGAACTGTCAGACCGTATTGGCTCCCTGTTCCCCAAACCCTTGTGAGAATGCTGGTGTTTGCAAAGAGGCACCAAATTTTGAGAGTTACTCCTGCCTGTGTGCTCCTGGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007909-'23-24,'23-22,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGCCTCTGTGATGCAG
R:
GCACACAGGCAGGAGTAACTC
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]