GgaEX1040079 @ galGal3
Exon Skipping
Gene
ENSGALG00000002375 | Q9W737_CHICK
Description
NA
Coordinates
chr17:8518379-8519779:+
Coord C1 exon
chr17:8518379-8518524
Coord A exon
chr17:8518763-8518876
Coord C2 exon
chr17:8519660-8519779
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTTTAACCCAGGAC
3' ss Score
8.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTACCGCTGTGATTGCGACCCGGGCTGGAGCGGGACAAACTGTGACATCAACAACAACGAGTGTGAATCCAACCCCTGCATGAATGGTGGCACCTGCAAGGACATGACCAGCGGTTACATCTGCACCTGCAGGGAGGGGTTCAGCG
Seq A exon
GACCCAACTGCCAGACCAATATCAATGAATGTGCTTCCAACCCCTGCCTGAACCAAGGCACGTGCATCGATGATGTGGCCGGCTACACCTGCAACTGCCTCCTGCCCTACACAG
Seq C2 exon
GAGCCACCTGTGAGGACGTGCTGGCCCCCTGCGCCGGCGGCCCCTGCAAGAACGGCGGCGAGTGCCGGGAGTCAGAGGACTACAAGAGGTTCTCGTGCAGCTGCCCGCCCGGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(93.8=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATTGCGACCCGGG
R:
CAGCTGCACGAGAACCTCTTG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]