BtaEX6047237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104000936-104003120:-
Coord C1 exon
chr11:104002975-104003120
Coord A exon
chr11:104002661-104002774
Coord C2 exon
chr11:104000936-104001055
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGCGTTTCCTCTCTCTCCAGGGC
3' ss Score
12.51
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTACAAGTGTGACTGTGACCCCGGGTGGAGTGGGGCCAACTGTGACGTCAACAACGACGAGTGTGAGTCGAACCCCTGCATCAACGGGGGCACCTGCAAGGACATGACCAGCGGCTACGTGTGCGCCTGCCGCGAGGGCTTCAGTG
Seq A exon
GGCCCAACTGCCAGACCAACATCAACGAGTGCGCATCCAACCCATGTCTGAACCAGGGCACGTGTATCGATGACGTGGCGGGGTACAAATGCAACTGCCTCTTGCCCTACACAG
Seq C2 exon
GGGCCACGTGTGAGGTGGTGCTGGCCCCATGTGCCCCCGGGCCCTGCAGAAACGGCGGTGAGTGTCGGGAGTCAGAGGACTATGAGAGCTTCTCCTGTGCCTGCCCCGCGGGCTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGTGACTGTGACCCCG
R:
CAGGCACAGGAGAAGCTCTC
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]