RnoEX0060453 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3921553-3923964:-
Coord C1 exon
chr3:3923819-3923964
Coord A exon
chr3:3923517-3923630
Coord C2 exon
chr3:3921553-3921672
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTCTTCTTCCTACAGGCC
3' ss Score
12.34
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATACAAATGTGACTGTGCCCCTGGGTGGAGTGGGACAAACTGTGACATCAACAACAATGAGTGTGAGTCCAACCCTTGTGTCAACGGTGGCACCTGCAAAGACATGACCAGTGGCTACGTATGCACCTGCCGAGAAGGCTTCAGTG
Seq A exon
GCCCTAACTGCCAGACCAACATTAACGAATGTGCTTCCAACCCCTGCCTGAACCAGGGCACCTGCATTGATGATGTCGCTGGGTACAAATGCAACTGCCCTCTGCCCTATACAG
Seq C2 exon
GAGCCACATGTGAGGTGGTGTTGGCCCCATGTGCCACCAGCCCCTGCAAAAACAGTGGGGTATGCAAGGAGTCTGAGGACTATGAGAGCTTTTCCTGTGTCTGTCCCACAGGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGTGACTGTGCCCCTG
R:
TGGGACAGACACAGGAAAAGC
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]