DreEX6014331 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:65037032-65039672:-
Coord C1 exon
chr5:65039527-65039672
Coord A exon
chr5:65039325-65039438
Coord C2 exon
chr5:65037032-65037151
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCTGATGTTTCATTATAGGTC
3' ss Score
10.51
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATATAACTGTATTTGCGACTCTGGCTGGAGTGGAGTCAACTGTGACATTAACAACAACGAGTGCGAGTCCAACCCCTGTATGAATGGAGGCACTTGTAAGGACATGACCAGTGGCTACGTCTGCACATGTCGCGCCGGCTTCAGCG
Seq A exon
GTCCCAATTGCCAAACGAATATCAACGAATGTGCCTCCAACCCATGCTTGAATCAAGGAACCTGCATTGATGATGTGGCCGGATACAAATGCAACTGTCTGCTTCCTTACACTG
Seq C2 exon
GCGAGAACTGTGAGACCCTGTTGGCCCCGTGCGGCTCTAAACCCTGTAAGAACGGAGGCGTTTGCAAGGAATCGGAAGACTACGAGAGCTTCTCTTGTGTGTGTCCTGCGGGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTTGCGACTCTGGCTGG
R:
CGCAGGACACACACAAGAGAA
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]