MmuEX6072810 @ mm9
Exon Skipping
Gene
ENSMUSG00000027878 | Notch2
Description
Notch gene homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:97364]
Coordinates
chr3:97916933-97920743:+
Coord C1 exon
chr3:97916933-97917078
Coord A exon
chr3:97919155-97919268
Coord C2 exon
chr3:97920624-97920743
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTCCTCCTCCAGGCT
3' ss Score
10.83
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTATAAGTGCCTCTGCGATGCAGGCTGGGTTGGTGTCAACTGTGAGGTGGACAAAAATGAGTGTCTTTCTAACCCATGCCAGAATGGAGGAACGTGCAATAACCTGGTGAATGGCTACAGGTGTACCTGCAAGAAGGGGTTCAAAG
Seq A exon
GCTACAACTGCCAGGTGAATATAGATGAGTGTGCCTCCAACCCGTGTCTGAACCAAGGAACCTGCTTTGATGACGTCAGTGGCTACACTTGCCACTGCATGTTGCCTTACACAG
Seq C2 exon
GCAAGAACTGTCAAACAGTGTTGGCTCCCTGTTCCCCAAACCCGTGTGAGAATGCTGCTGTTTGTAAAGAGGCACCCAATTTTGAGAGCTTCAGCTGCTTGTGTGCTCCTGGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027878-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAAGTGCCTCTGCGATGCA
R:
GGAGCACACAAGCAGCTGAAG
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: