BtaEX6016217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35652235-35657343:+
Coord C1 exon
chr3:35652235-35652303
Coord A exon
chr3:35653964-35654050
Coord C2 exon
chr3:35657258-35657343
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCTTTATTCTTTAGGAC
3' ss Score
12.5
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GAGCTGGTCAAACATACCACTGATCCTATGGAGAAGGCAAATCTGAAACTGGCTCTTGATGCAATGAAG
Seq A exon
GACTTGGCACAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAGCTATCTATAGAAAATTTG
Seq C2 exon
AACCAACCCGTTTTGCTTTTTGGACGACCTCAGGGAGATGGTGAAATTCGAATAACCACTCTAGACAAACATACAAAACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
PF0062115=RhoGEF=PD(4.0=24.1)
C2:
PF0016924=PH=PU(17.8=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTCAAACATACCACTGA
R:
TCTTGTTTTGTATGTTTGTCTAGAGT
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]