GgaEX0002323 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1069494-1072894:-
Coord C1 exon
chr8:1072826-1072894
Coord A exon
chr8:1070582-1070668
Coord C2 exon
chr8:1069494-1069579
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGGTTGATGCTCTAGGAC
3' ss Score
8
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GAGCTGGTAAAGCACACTACAGATCCCATGGAGAAAGCAAATCTAAAACTGGCACTTGATGCAATGAAG
Seq A exon
GACTTGGCTCAGTATGTAAATGAAGTGAAGAGAGATAATGAAACACTCCGTGAAATTAGACAATTTCAACTATCAATAGAGAATTTG
Seq C2 exon
AACCATTCTCTCTTACAGTATGGAAGACCTCAGGGTGATGGGGAGATAAGAATAACTACGTTAGACAAACGTGCAAGGCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'14-18,'14-17,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
PF0062115=RhoGEF=PD(4.0=24.1),PF0063014=Filamin=PU(5.7=69.0)
C2:
PF0016924=PH=PU(18.6=65.5),PF0063014=Filamin=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAAGCACACTACAGATCCC
R:
CTGTCTTGCCTTGCACGTTTG
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]