MmuEX0051294 @ mm9
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109322351-109328872:+
Coord C1 exon
chr3:109322351-109322419
Coord A exon
chr3:109324359-109324445
Coord C2 exon
chr3:109328787-109328872
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCTCCATTCTCTAGGAC
3' ss Score
11.86
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GAGCTGGTAAAACACACCCATGACCCTATGGAGAAGGCGAACCTGAAGCTGGCTCTGGATGCAATGAAG
Seq A exon
GACTTGGCACAATATGTGAATGAAGTAAAAAGAGATAATGAGACCCTTCGTGAAATTAAGCAGTTTCAGCTATCTATAGAGAATTTG
Seq C2 exon
AACCAGCCAGTTTTGCTCTTTGGACGACCACAGGGAGACGGTGAAATCCGAATAACCACTCTGGACAAGCATACAAAACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
PF0062115=RhoGEF=PD(4.0=24.1)
C2:
PF0016924=PH=PU(17.8=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTAAAACACACCCATGA
R:
TCTTGTTTTGTATGCTTGTCCAGA
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: