BtaEX6016549 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50108822-50115055:-
Coord C1 exon
chr3:50114951-50115055
Coord A exon
chr3:50110849-50110977
Coord C2 exon
chr3:50108822-50108968
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGGACCAATTTGCCTCTAGGCT
3' ss Score
6.94
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCAGAGAAGGCACAACAGAGTTACGAAAGATTGGATAATGACACGAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GCTAAACAGCAGTTGAATCTACGTACGCATATGGCTGATGAAAATAAGAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAGCACAAACATTTCTATGTAGTGATTCCTCAGATTTACAAG
Seq C2 exon
CAACTGCAAGAAATGGATGAACGAAGGACTATTAAACTTAGTGAGTGTTACAGAGGATTTGCAGACTCAGAACGGAAAGTTATTCCTATCATTTCAAAGTGTTTGGAAGGAATGATTCTTGCAGCAAAATCAGTTGACGAAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383-'9-17,'9-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.512 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGAAAGAGAATGTAGAGAGGCA
R:
TCTTCTTTCGTCAACTGATTTTGCTG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]