DreEX0033197 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15024072-15025671:+
Coord C1 exon
chr8:15024072-15024176
Coord A exon
chr8:15024331-15024459
Coord C2 exon
chr8:15025525-15025671
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACCAATCATTCTGTCCTAGGCA
3' ss Score
6.47
5' ss Seq
ACTGTAATG
5' ss Score
-3.61
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAACGGGAATGCAAAGAGGCGGAGAAATCGCAGATGATGTACGAGAGGTTAGACAATGACATCAACGCCACAAAGTCAGAAGTCGAAAAG
Seq A exon
GCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACT
Seq C2 exon
AATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'9-9,'9-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.140 C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTTTGAACGGGAATGCA
R:
TCGCTCGTCCACATTTTTAGCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]