DreEX0033196 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15019039-15024459:+
Coord C1 exon
chr8:15019039-15019101
Coord A exon
chr8:15024072-15024176
Coord C2 exon
chr8:15024331-15024459
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTATGGATTTAACAGAGT
3' ss Score
5.31
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
CATCTTCAGGAGGGACGGAAGGCCCAGCAGTATCTAGACCAGTGCTGGAAACACATGGACAAT
Seq A exon
AGTAAAAAGAAGTTTGAACGGGAATGCAAAGAGGCGGAGAAATCGCAGATGATGTACGAGAGGTTAGACAATGACATCAACGCCACAAAGTCAGAAGTCGAAAAG
Seq C2 exon
GCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.229 C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCAGGAGGGACGGAAGG
R:
ATATCTGAGGGATGGCCTGGT
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]