GgaEX1025313 @ galGal3
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14578436-14580349:-
Coord C1 exon
chr8:14580287-14580349
Coord A exon
chr8:14579078-14579182
Coord C2 exon
chr8:14578436-14578564
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAGTTTGTGGCTTTTGTAGAGT
3' ss Score
5.74
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CATCTTCAGGAAGGACGAAAGGCTCAACAGTATCTGGACATGTGCTGGAAACAGATGGATAAC
Seq A exon
AGTAAAAAGAAATTTGAGAGAGAATGCAGAGAGGCAGAGAAGGCGCAGCAAAGCTATGAAAGACTGGACAATGACACTAATGCGACAAAGGCTGATGTTGAAAAG
Seq C2 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'9-13,'9-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.714 C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAGGACGAAAGGCTCA
R:
CTTGTAAATCTGAGGAATGACAATGT
Band lengths:
187-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]