HsaEX1014734 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93524261-93530883:+
Coord C1 exon
chr1:93524261-93524323
Coord A exon
chr1:93529652-93529756
Coord C2 exon
chr1:93530755-93530883
Length
105 bp
Sequences
Splice sites
3' ss Seq
TATTTTAATTTTTTTAACAGAGT
3' ss Score
7.64
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CATCTGCAAGAAGGACGAAAAGCTCAACAATATCTTGACATGTGCTGGAAACAGATGGATAAT
Seq A exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAGGCAGAAAAGGCACAACAGAGTTATGAAAGATTGGATAATGATACTAATGCAACCAAGGCAGATGTTGAAAAG
Seq C2 exon
GCCAAACAGCAGTTGAATCTGCGTACGCATATGGCCGATGAAAATAAAAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAACATAAACATTTTTATGTAGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'20-22,'20-20,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.723 C2=0.502
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAAGGACGAAAAGCTCA
R:
CTTGTAAATCTGAGGAATCACTACAT
Band lengths:
188-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains