RnoEX0036526 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226710504-226718532:-
Coord C1 exon
chr2:226718470-226718532
Coord A exon
chr2:226713561-226713665
Coord C2 exon
chr2:226710504-226710632
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGTTAAAATTTTCTTTACAGAGT
3' ss Score
6.65
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CATCTTCAAGAAGGACGAAAAGCTCAACAATACCTAGACATGTGTTGGAAACAGATGGATAAT
Seq A exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCTGAGAAAGCACAGCAGAGTTATGAAAGACTGGATAATGATACAAATGCAACCAAGGCAGATGTTGAAAAG
Seq C2 exon
GCCAAGCAGCAGCTGAACCTCCGCACGCACATGGCTGACGAGAATAAAAACGAATACGCCGCGCAGCTGCAGAACTTCAACGGGGAGCAGCACAAGCATTTCTACGTGGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'13-11,'13-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.714 C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000055669fB5645
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGAAGGACGAAAAGCTCA
R:
TGTAAATCTGAGGAATCACCACGT
Band lengths:
188-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]