MmuEX6073849 @ mm10
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122560833-122568815:-
Coord C1 exon
chr3:122568753-122568815
Coord A exon
chr3:122563835-122563939
Coord C2 exon
chr3:122560833-122560961
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGTAAACTTTTCTTTACAGAGT
3' ss Score
8.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATCTCCAAGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAAT
Seq A exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCACCAAGGCAGATGTTGAAAAG
Seq C2 exon
GCCAAACAGCAGTTGAACCTTCGTACGCATATGGCTGATGAGAATAAAAATGAATATGCTGCACAGCTGCAAAATTTTAATGGAGAACAGCACAAACATTTTTATGTGGTAATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'18-18,'18-15,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.711 C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAAGGACGAAAAGCTCA
R:
CTTGTAAATCTGAGGAATTACCACA
Band lengths:
188-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types