GgaEX1025313 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12828113-12830026:-
Coord C1 exon
chr8:12829964-12830026
Coord A exon
chr8:12828755-12828859
Coord C2 exon
chr8:12828113-12828241
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAGTTTGTGGCTTTTGTAGAGT
3' ss Score
5.74
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CATCTTCAGGAAGGACGAAAGGCTCAACAGTATCTGGACATGTGCTGGAAACAGATGGATAAC
Seq A exon
AGTAAAAAGAAATTTGAGAGAGAATGCAGAGAGGCAGAGAAGGCGCAGCAAAGCTATGAAAGACTGGACAATGACACTAATGCGACAAAGGCTGATGTTGAAAAG
Seq C2 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'12-18,'12-15,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.729 C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAGGACGAAAGGCTCA
R:
CTTGTAAATCTGAGGAATGACAATGT
Band lengths:
187-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]