MmuEX6073849 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122263751-122271733:-
Coord C1 exon
chr3:122271671-122271733
Coord A exon
chr3:122266753-122266857
Coord C2 exon
chr3:122263751-122263879
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGTAAACTTTTCTTTACAGAGT
3' ss Score
8.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATCTCCAAGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAAT
Seq A exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCACCAAGGCAGATGTTGAAAAG
Seq C2 exon
GCCAAACAGCAGTTGAACCTTCGTACGCATATGGCTGATGAGAATAAAAATGAATATGCTGCACAGCTGCAAAATTTTAATGGAGAACAGCACAAACATTTTTATGTGGTAATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.714 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAAGGACGAAAAGCTCA
R:
CTTGTAAATCTGAGGAATTACCACA
Band lengths:
188-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: