RnoEX6011380 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226708767-226713665:-
Coord C1 exon
chr2:226713561-226713665
Coord A exon
chr2:226710504-226710632
Coord C2 exon
chr2:226708767-226708913
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGACCATTTTTGTCTGTAGGCC
3' ss Score
7.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCTGAGAAAGCACAGCAGAGTTATGAAAGACTGGATAATGATACAAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GCCAAGCAGCAGCTGAACCTCCGCACGCACATGGCTGACGAGAATAAAAACGAATACGCCGCGCAGCTGCAGAACTTCAACGGGGAGCAGCACAAGCATTTCTACGTGGTGATTCCTCAGATTTACAAG
Seq C2 exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATCCCCATCATCTCGAAATGTCTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.512 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTGAAAGAGAATGTAGAGAGGC
R:
CTTCTCTCATCAACTGATTTTGCTGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]