BtaEX6016578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50492664-50497133:-
Coord C1 exon
chr3:50496963-50497133
Coord A exon
chr3:50492836-50492941
Coord C2 exon
chr3:50492664-50492716
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAATGGTTTTATGTTTCAGGGA
3' ss Score
9.31
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACCTCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGAATCAAG
Seq A exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCGTATACAAGAAAAATGATTCAGAAAACTGCTGAGCCACCTTTG
Seq C2 exon
GATAAGGAGTCAATTTCAGAGAATCCTAGTTTGGATTTACCTTGTTCTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393-'24-18,'24-17,25-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGAAATAAAGAAGAAGAAGC
R:
AGAACAAGGTAAATCCAAACTAGGA
Band lengths:
210-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]