GgaEX0008351 @ galGal3
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14693046-14694235:-
Coord C1 exon
chr8:14694065-14694235
Coord A exon
chr8:14693271-14693379
Coord C2 exon
chr8:14693046-14693104
Length
109 bp
Sequences
Splice sites
3' ss Seq
AAATATAAATTTTCTTCTAGGGA
3' ss Score
7.14
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
Seq A exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
Seq C2 exon
GATACTGAACCAGTTCCAGTGATAGAGACCCCAGCCTTGGAATTACCCTGCTCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.569 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF124463=DUF3682=PU(28.1=73.0)
C2:
PF124463=DUF3682=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAAAAAGAAGCATTTGTTTGGC
R:
CCAACAGAGCAGGGTAATTCCA
Band lengths:
210-319
Functional annotations
There are 0 annotated functions for this event