HsaEX6032139 @ hg19
Exon Skipping
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93594835-93599537:+
Coord C1 exon
chr1:93594835-93595005
Coord A exon
chr1:93599260-93599365
Coord C2 exon
chr1:93599485-93599537
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATAATGGTTTTCCATTTCAGGGA
3' ss Score
9.89
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGATTCAAG
Seq A exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTG
Seq C2 exon
GATAAGGAATCAATTTCAGAGAATCCTACTTTGGATTTACCTTGTTCTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-'23-24,'23-23,25-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.917 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGAAATAAAGAAGAAGAAGC
R:
AGAACAAGGTAAATCCAAAGTAGGA
Band lengths:
210-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)