GgaINT0037229 @ galGal3
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14693046-14693379:-
Coord C1 exon
chr8:14693271-14693379
Coord A exon
chr8:14693105-14693270
Coord C2 exon
chr8:14693046-14693104
Length
166 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GTACTCTTCTTTTTTCTTAGGAT
3' ss Score
10.34
Exon sequences
Seq C1 exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
Seq A exon
GTAAGGTTTTGGATATGTTTCTTTTATTTTATCTAACTGGATTATCATTTTTGAAGAAAAATATAATCAGTTAATCTAAATCATGATATTCCTCTCCCCATTTGCCCTCAAACTAAGCTGAATAAGCAGTTAAAACTTAATCTGAAGTACTCTTCTTTTTTCTTAG
Seq C2 exon
GATACTGAACCAGTTCCAGTGATAGAGACCCCAGCCTTGGAATTACCCTGCTCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF124463=DUF3682=PU(28.1=73.0)
A:
NA
C2:
PF124463=DUF3682=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAATGGTATAGAAAGAAAGGGGA
R:
CCAACAGAGCAGGGTAATTCCA
Band lengths:
162-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]