MmuINT0101691 @ mm10
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108104020-108104318:+
Coord C1 exon
chr5:108104020-108104125
Coord A exon
chr5:108104126-108104265
Coord C2 exon
chr5:108104266-108104318
Length
140 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTTTTTTTTGTAATTTTCAGGAT
3' ss Score
11.74
Exon sequences
Seq C1 exon
GGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCTCCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTG
Seq A exon
GTAAGAGGATTTGTTTGCATATGTTCTCAGTAAAAAGAAGCTTGTAATTGTTGAGAACTGAATGCCTTATTTCAGTTATAGTAGAATTGTCCTTTATGAATTTTTTTCCTTTAATTTTTTTTTTTTTTTGTAATTTTCAG
Seq C2 exon
GATAAGGAATCAGTTTCAGAGAATCCTACGTTGGATTTACCTTGTTCTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267:ENSMUST00000081567:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTAAGCAATGGGATAGAAAAA
R:
AGAACAAGGTAAATCCAACGTAGGA
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types