BtaINT0095834 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50492664-50492941:-
Coord C1 exon
chr3:50492836-50492941
Coord A exon
chr3:50492717-50492835
Coord C2 exon
chr3:50492664-50492716
Length
119 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTTTTGTTTTTCTTTTCCAGGAT
3' ss Score
13.19
Exon sequences
Seq C1 exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCGTATACAAGAAAAATGATTCAGAAAACTGCTGAGCCACCTTTG
Seq A exon
GTAAGAGGATATATTGGTATATGTTCTCAGAGAAGAAGTCTGCTTGAAATTACTGAGAAACTAATTTCTTTTCATTACTTGTAGAAACTATTCTTTAAATTTTTGTTTTTCTTTTCCAG
Seq C2 exon
GATAAGGAGTCAATTTCAGAGAATCCTAGTTTGGATTTACCTTGTTCTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTAAGCAATGGCATAGAAA
R:
AGAACAAGGTAAATCCAAACTAGGA
Band lengths:
154-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]