BtaEX6016591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50929873-50937435:+
Coord C1 exon
chr3:50929873-50930097
Coord A exon
chr3:50930905-50930979
Coord C2 exon
chr3:50937310-50937435
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAACATTTTTTACTTTTTAGGCA
3' ss Score
8.2
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAACTTGTTCGTAAAGGGATACCCCATCATTTTAGAGCAATAGTTTGGCAACTTTTGTGCAGTGCACAAAGTATGCCAATTAAGGATCAGTATTCAGAACTCCTGAAAATGACCTCACCTTGTGAAAAATTGATCCGAAGGGACATTGCTAGAACTTACCCTGAACACAATTTTTTTAAGGAAAAAGATAGCCTTGGACAGGAAGTTTTGTTTAATGTAATGAAG
Seq A exon
GCATATTCTTTAGTGGATCGTGAGGTTGGTTACTGTCAAGGAAGTGCTTTTATAGTTGGATTGCTGCTTATGCAG
Seq C2 exon
ATGCCAGAAGAAGAAGCTTTCTGTGTATTTGTTAAATTAATGCAAGATTATAGACTTCGTGAACTTTTTAAACCAAGTATGGCAGAATTAGGCCTTTGTATGTACCAGTTTGAATGCATGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'11-7,'11-5,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACATTGCTAGAACTTACCCT
R:
GCCTAATTCTGCCATACTTGGT
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]