MmuEX1009746 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107818889-107820656:-
Coord C1 exon
chr5:107820432-107820656
Coord A exon
chr5:107819604-107819678
Coord C2 exon
chr5:107818889-107819014
Length
75 bp
Sequences
Splice sites
3' ss Seq
CGTCATGCTTTTCTCTTTAGGCA
3' ss Score
9.35
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTTGTTCGTAAAGGGATACCCCATCACTTCAGAGCAATAGTGTGGCAACTTTTATGTAATGCACAGAGTATGACAATTAAGGACCAGTATTCAGAACTCCTGAAAATGACTTCACCTTGTGAAAAACTGATACGAAGGGACATTGCTAGAACTTATCCAGAACACAACTTTTTTAAGGAAAAAGATAGCCTTGGACAGGAGGTTTTATTTAATGTAATGAAG
Seq A exon
GCATACTCCTTAGTGGACCGTGAGGTTGGTTACTGTCAGGGCAGTGCTTTCATCGTTGGATTGTTGCTGATGCAG
Seq C2 exon
ATGCCAGAAGAAGAGGCTTTTTGTGTATTTGTTAAATTAATGCAAGACTACAGACTTCGTGAACTATTTAAGCCAAGTATGGCGGAATTGGGCCTTTGTATGTACCAGTTTGAATGTATGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'28-28,'28-27,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.2=100)
Main Skipping Isoform:
ENSMUST00000112642fB9622
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGGACATTGCTAGAACT
R:
GCCCAATTCCGCCATACTTGG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types