DreEX6022142 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29053534-29054506:-
Coord C1 exon
chr6:29054282-29054506
Coord A exon
chr6:29053886-29053960
Coord C2 exon
chr6:29053534-29053659
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTTACGTTGGCATTTACAGGCT
3' ss Score
6.51
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAACTGGTTAGGAAAGGTGTTCCGCATCACTTTCGAGCGATAGTGTGGCAGTTGTTGTGCAATGCCCAGAACCTACCCATAAAGGAGCAGTACTCTGAGCTGCTGAAGATGACCTCGCCCTGTGAAAAACTCATTCGCAGAGATATTGCCCGTACCTACCCCGAGCACGAGTTCTTTAAAGAGAAGGACAGTCTGGGTCAGGAGGTGCTCTTTAATGTGATGAAG
Seq A exon
GCTTATTCTCTGGTTGATCGAGAAGTGGGCTACTGTCAAGGAAGTGCTTTTATTGTTGGACTTCTTCTGATGCAG
Seq C2 exon
ATGCCAGAGGAAGAAGCATTCTGTGTGTTTGTGAAACTGATGCAGGAGTACAGGCTGAGAGAGCTTTTCAAACCCAGTATGGCTGAATTGGGCCTCTGCATGTATCAGTTTGAATGTATGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'16-13,'16-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCGCCCTGTGAAAAAC
R:
TCTCTCAGCCTGTACTCCTGC
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]