BtaEX6019299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030190 | COL6A3
Description
collagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2213]
Coordinates
chr3:117462934-117468086:-
Coord C1 exon
chr3:117467487-117468086
Coord A exon
chr3:117465614-117466186
Coord C2 exon
chr3:117462934-117463542
Length
573 bp
Sequences
Splice sites
3' ss Seq
ACGACCCACTTTTGTTGCAGAGA
3' ss Score
8.03
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TAACAGCCTTGATGTTGGAAGCGACCACATTCGGGTCGGTCTAGTGCAATTTAGTGACACTCCGGTGACGGAGTTCTCCCTAAACACCTACCCGACCAAGTCAGAGTTGCTAGCTCACCTGAGGCAGATGCAGCTCCAGGGGGGGTCGGTCCTGAACACGGGCGCGGCCCTGAGCTATGTGCATGCCAACCACTTCACCGAAGCTGGCGGCAGCAGGATCCAGGACCACGTGCCGCAGCTGCTACTCCTGCTCACGGCCGGGCAGTCTGAGGACTCCTATTTGCAAGCCGCCAACGCCCTGGCGCGCGCGGGCATCCTGACCTTTTGTGTGGGCACTAGCCAGGCCGATAGGGCGGAGCTTGAGGAGATTGCTTTTAACCCGGGCCTGGTGTATCTCATGGATGATTTCAGCTCCTTGCCAGCTTTGCCTCAACAGCTGATTCAGCCCCTAACCACTTATGTTAGCGGAGGTGTGGAGGAGGTGCCTCTTGCCCAGCCAG
Seq A exon
AGAGCAAGCGAGACATCCTGTTCCTTTTCGACGGCTCAGCCAACCTCATGGGCCAGTTCACTGCCGCCCGTGACTTTCTCTACAAGGTCATCGACGAGCTGGATGTGAAACCTGAGGGGACCCGGGTTGCAGTGGCTCAGTTCAGTGATGATGTCAAGGTGGAGTCCCGTTTTGACCAGCACCAGAATAAGCCTGAGATCCTGAATCTCGTGAAGAGGATGAAGCTCAAGACAGGCAAAGCCCTCAACCTGGGCTACGCCTTGGATTACGCACAGAGGTACATCTTTGTGAAGTCCGCTGGAAGCCGGATTGAGGATGGAGTGCTTCAGTTCCTGGTGCTGCTGGTGGCGGGAAAGTCATCGGACCGGGTGGATACACCCGCACTCAACCTGAAGCAGAGCGGGGTGGTGCCCTTCATCCTCCAGGCGAAAAACGCGGACCCTGCTGAGTTGGAGCTGATCGTACCATCCCCAGCCTTTATTTTGGTTGCGGAGTCCCTTCCTAAGATTGGAGACCTGCAACCACAGATTGTGAACCTCTTAAAATCAGTGCAAAATGGGGCACCGGCACCAG
Seq C2 exon
TTTCAGTTGAAAAGGATGTGGTGTTCCTGATTGATGGCTCCGAGGGTGTCAGGAGCGGCTTCCCACTGCTGAAGGAGTTCGTCCAGAGAGTGGTGGAGAGCCTGGACGTGGGACCAGACCGGGTGCGTGTGGCCGTGGTGCAGTACAGCGACCGGACCAGACCTGAGTTCTACCTGAATTCCTACATGGACCAGCAGAGTGTGGTCGGAGCCATCCGTGGGCTGACCCTGCTGGGCGGGCCGGCCCCCAACACAGGGGCTGCCCTGGAGTTCGTCCTGAGGAACATCCTGGTGGGCTCTGCTGGGAGCCGCATAGCAGAAGGTGTCCCCCAGCTCCTGATTGTCCTCACGGCCGACAGGTCTGGGGATGACGTGAGGGGCCCCTCTGTGGTCCTGAGGAGGGGAGGGGCCGTGCCCATCGGCATCGGCATTGGGAACGCTGACATCACCGAGATGCAGACCCTCTCCTTCGTCCCGGACTTCGCCGTGGTCATCCCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030190-'5-11,'5-10,6-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=88.6)
A:
PF0009223=VWA=WD(100=90.1)
C2:
PF0009223=VWA=WD(100=85.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTTTTGTGTGGGCACT
R:
TAGAACTCAGGTCTGGTCCGG
Band lengths:
356-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]