RnoEX6040872 @ rn6
Exon Skipping
Gene
ENSRNOG00000019648 | AABR07068316.1
Description
collagen type VI alpha 3 chain [Source:NCBI gene;Acc:367313]
Coordinates
chr9:97969451-97975865:-
Coord C1 exon
chr9:97975281-97975865
Coord A exon
chr9:97970549-97971121
Coord C2 exon
chr9:97969451-97970053
Length
573 bp
Sequences
Splice sites
3' ss Seq
TCCATCTGTTTTCCTCGTAGAGG
3' ss Score
9.43
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTTCATTAGCAGAGTCATCCAGAGGCTGGAAATTGGTCAGGACCTGGTTCAGGTATCAGTGGCTCAGTATGCAGACACCGTCAAGCCCGAGTTCTATTTAAATACCTACTCTACCAAGAAGGATGCTATAACCACTGTGCGGAAGATGAAGGCCCTGGAAGGCTCAGCCCTGTACACGGGGTCTGCTCTGGACTTTGTTCGAAACAACCTCTTCACTAGCTCAGCCGGCCACAGGGCCGCTGAGGGGGTTCCGAAGCTCCTGGTGCTAATCACAGGTGGTAAGTCACTCGATGATGTCAGCCAGGCTGCCCAGGAGCTGCAGAAAGGCAGCATCATGGCCTTGGTCATTGGCAGCAGGGCCGCCGATGAAGACGAGCTGAAAGAGATCGCTTTCGACTCCTCCCTGGTCTTCATTCCTGCTGAGTTCCGCCCTGCTCCCTTACAAAGCATGCTGCCCAGCCTGATGGCACCCCTCAGGACCCTCACCGGAACCACAGAAG
Seq A exon
AGGTCAAGCGGGACATTCTTTTCCTCTTTGATGGCTCAGTCAATGTCATGGGCCAGTTCCCTGCTGTCAGAGACTTTCTCTACAGGATCATTGAGGAGCTCGATGTGAAGCCAGATGGGACCCGGGTAGCAATAGCGCAGTTCAGTGATGACGTCAGGGTGGAGTCCCGTTTCAATGAGCACCAGACGAAGGCTGAAATCCTTAACCTCGTGAAGAAGATGAAGTTAAAGACAGGCAAAGGTCTCAACCTGGGCTTGGCCCTGGATCACGCCCTTAGGACCATCTTTGTGAGGTCGGCTGGCAGCCGCATCGAGGACAACGTGCAGCAGTTCCTGGTGCTCCTGGTGGCTGGAAGGTCGACAGATGCTGTGGCCGGGCCTGCAAGCTCTCTGAAGCAGAGAGGGGTGATACCTTTCATCTTCCAAGCCAAGAATGCCAATCCCAGTGAGCTGGAGCAGATTGTGCCATCCCCCGCATTCATCCTGGCTGCAGAGTCGCTCCCTAAGATCGGGGACCTCCAGTCAGAGATTGTGGGCCTTCTGAAGGCTAAACAGACTTCAGACACTGTATCAG
Seq C2 exon
GTGAAAAGGATGTGGTGTTTCTGATTGATGGCTCCGAGGGGGTCCGGAGTGGCTTCCCCCTGCTAAAGGAGTTTGTGCAGAGGGTCGTGGAGAGCCTGGATGTGGGTCCCAACCAGGTGCGTGTGGCACTGGTGCAGTACAGTGACCGGACCAGGCCGGAGTTCTATCTGAATTCCCACATGGACCAGCAGGGTGTCATCAGCGCCATCCGCAGACTGACACTGCTGGGCGGCCCAACCCCCAACACAGGGGCGGCACTGGACTTTGTGTTAAGGAATATCCTGACCAGTTCTACTGGGAGCAGGATAGAAGAAGGTGTTCCTCAGCTCCTGATCGTCCTCACGGCGGAGCGGTCAGGGGATGATGTGAGAGGCCCCTCGGTGGTCCTGAAGCAGGGAGGGGCTGTGCCCATTGGTATTGGCATTGGAAATGCTGACATCTCTGAAATGCAGACCATCTCCTTCATCCCCGACTTCGCTGTGGCCATCCCCACCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019648-'9-8,'9-7,12-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCATGGCCTTGGTCAT
R:
TCAGATAGAACTCCGGCCTGG
Band lengths:
344-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]