BtaEX6020601 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28040218-28044253:-
Coord C1 exon
chr5:28044097-28044253
Coord A exon
chr5:28042980-28043104
Coord C2 exon
chr5:28040218-28040348
Length
125 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTTTGCTGTTGCAGATA
3' ss Score
10.36
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGAAACCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAACATCCTGGTGAAGAAAAATGGCATGTGCGCCATCGCAGACCTGGGTTTGGCTGTCCGTCACGATGCGGTCACAGACACCATTGACATTGCCCCTAACCAGAGGGTGGGAACTAAACG
Seq A exon
ATACATGGCCCCCGAAGTGCTCGATGAAACCATCAACATGAAGCACTTCGACTCCTTTAAATGTGCTGATATCTATGCCCTCGGTCTTGTGTACTGGGAGATTGCTCGAAGATGCAACTCTGGAG
Seq C2 exon
GGGTCCATGAAGAATATCAGCTGCCATATTATGACCTAGTGCCCTCTGACCCTTCCATCGAGGAGATGCGGAAGGTTGTATGTGACCAGAAGCTCCGTCCCAACATCCCCAACTGGTGGCAGAGTTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(14.6=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGAATTGCTCATCGAGAC
R:
TGGTCACATACAACCTTCCGC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]