DreEX6081192 @ danRer10
Exon Skipping
Gene
ENSDARG00000018968 | acvr1ba
Description
activin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
Coordinates
chr23:27877698-27878979:-
Coord C1 exon
chr23:27878823-27878979
Coord A exon
chr23:27878599-27878723
Coord C2 exon
chr23:27877698-27877828
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTCCCCTTTCTTAGATA
3' ss Score
9.92
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAAACCAGGCATCGCACATCGTGACCTCAAATCCAAAAACATCTTGGTGAAAAAGAATGGTACTTGCGCCATAGCAGATCTAGGGCTCGCTGTACGGCACGAGTCTATCACTGATACTATAGACATTGCACCCAATCAGAGGGTGGGCACTAAAAG
Seq A exon
ATATATGGCCCCAGAGGTACTAGATGAAACGATCAACATGAAGCATTTTGATTCTTTCAAGTGTGCTGATATCTATGCTTTGGGACTGGTATATTGGGAGATTGCACGACGGTGTAATGCTGGAG
Seq C2 exon
GTATCCATGAAGATTATCAGCTACCCTACTATGACCTGGTGCCGTCCGACCCCTCCATAGAAGAGATGAGGAAGGTGGTGTGTGACCAGAGGCTTCGGCCTAATGTGCCCAACTGGTGGCAGAGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018968-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(14.6=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCACATCGTGACCTCAA
R:
CGAAGCCTCTGGTCACACAC
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]