RnoEX6034145 @ rn6
Exon Skipping
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142848566-142854962:+
Coord C1 exon
chr7:142848566-142848722
Coord A exon
chr7:142849852-142849976
Coord C2 exon
chr7:142854832-142854962
Length
125 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTCTTCCATTCCAGATA
3' ss Score
10.69
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGAAGCCTGGAATTGCTCATCGAGACTTGAAGTCAAAGAACATTCTGGTGAAGAAGAATGGCATGTGTGCCATTGCAGACCTGGGCCTAGCTGTCCGTCACGATGCTGTCACTGACACCATAGACATTGCTCCAAATCAGAGGGTGGGAACCAAACG
Seq A exon
ATACATGGCTCCTGAAGTACTTGACGAGACCATCAACATGAAGCACTTTGACTCCTTCAAGTGTGCCGATATCTACGCCCTCGGGCTTGTCTATTGGGAGATTGCTCGGAGGTGCAATTCTGGAG
Seq C2 exon
GAGTCCATGAAGAGTATCAACTGCCATATTATGATTTAGTGCCCTCTGACCCTTCCATTGAGGAAATGCGAAAGGTCGTCTGTGACCAGAAGCTACGGCCCAATGTCCCCAACTGGTGGCAGAGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(14.6=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAATTGCTCATCGAGA
R:
CATTGGGCCGTAGCTTCTGG
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]