BtaEX6020640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28476131-28480553:-
Coord C1 exon
chr5:28480302-28480553
Coord A exon
chr5:28477510-28477578
Coord C2 exon
chr5:28476131-28476304
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCTTTCATTTTCAGTTT
3' ss Score
12
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAAGGATGTGGCTACCACCTGGACCTGCTGATGGTGGCCATCATGCTGGGTGTCTGCTCCATCATGGGCCTGCCCTGGTTTGTGGCTGCAACTGTCCTATCCATCACACACGTGAATAGCCTCAAACTGGAATCTGAGTGCTCTGCCCCAGGAGAACAGCCCAAATTCTTGGGCATCCGAGAACAGAGAGTGACAGGCCTTATGATCTTTGTGTTGATGGGCTGCTCAGTCTTCATGACAGCTATATTAAAG
Seq A exon
TTTATCCCGATGCCAGTCCTGTATGGAGTCTTCCTCTACATGGGAGTGTCTTCCCTGCAAGGAATTCAG
Seq C2 exon
TTCTTCGACCGCCTGAAGCTCTTCGGGATGCCTGCGAAGCACCAGCCGGACTTCATTTACCTGCGGCACGTGCCGCTGCGCAAGGTGCACCTGTTCACCCTCATCCAGCTCACCTGCCTCGTCCTGCTCTGGGTCATCAAGGCATCTCCAGCGGCCATTGTCTTTCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'28-29,'28-27,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCTCAGTCTTCATGAC
R:
GATGCCTTGATGACCCAGAGC
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]