DreEX0073105 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40399214-40401277:+
Coord C1 exon
chr6:40399214-40399465
Coord A exon
chr6:40400949-40401017
Coord C2 exon
chr6:40401104-40401277
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCACTATTTTTGTTTCACAGTTC
3' ss Score
9.7
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AAAGGCTGTGGGTACCATTTGGATCTGCTGATGGTCGGGGTGATGTTGGCTGTATGTTCTATGTTGGGATTGCCCTGGTTTGTAGCAGCGACCGTCCTGTCAATATCCCACGTCAACAGCCTGAAGCTGGAGTCTGAAAGCTCAGCCCCTGGAGAACAGCCTCGTTTCCTGGGTATTCAAGAACAGAGGCTGACTGGATTGTTTATCTTTCTGCTCATGGGCTGCTCTGTGTTCATGACTGGATTGTTACAG
Seq A exon
TTCATTCCCATGCCGGTTCTCTATGGTGTTTTTCTTTATATGGGCGTCTCATCTCTGAAAGGCATTCAG
Seq C2 exon
TTGTTTGACCGTCTGAAGCTGTTTGGCATGCCAGCGAAGCATCAGCCAGACTTTATTTATCTCCGCCATGTTCCTCTGAGGAAGGTTCACTTGTTCACTCTGACCCAACTTACCTGCCTTGTGCTGCTCTGGGTCATTAAACATTCCCCTGCCGCAATCGTGTTTCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACAGCCTCGTTTCCTGG
R:
TCAGAGGAACATGGCGGAGAT
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]