RnoEX0082876 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142454723-142458161:+
Coord C1 exon
chr7:142454723-142454974
Coord A exon
chr7:142457077-142457145
Coord C2 exon
chr7:142457988-142458161
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTTGAGTCTTTCTCTGCAGTTT
3' ss Score
7.27
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAGGCTGTGGCTACCATCTGGACCTGCTCGTGGTGGCCATCATGCTGGGGGTCTGCTCCCTCATGGGCCTGCCTTGGTTCGTGGCTGCGACCGTGCTGTCCATTACTCATGTGAATAGCCTCAAGCTGGAATCTGAATGCTCTGCTCCGGGGGAGCAGCCTAAGTTTCTGGGCATCCGAGAACAGAGAGTCACGGGCCTCATGATCTTTGTGCTGATGGGCTGCTCCGTCTTCATGACAGCGGTCTTAAAG
Seq A exon
TTTATCCCAATGCCAGTGCTCTACGGAGTTTTCCTCTACATGGGAGTCTCTTCTCTACAAGGAATCCAG
Seq C2 exon
TTCTTTGACCGTCTGAAGCTTTTTGGGATGCCTGCAAAACACCAGCCAGACTTCATCTACCTGCGGCACGTGCCGCTGCGCAAAGTGCACCTCTTCACGCTGGTCCAGCTCACCTGCCTCGTCCTGCTCTGGGTCATTAAGGCGTCACCGGCTGCCATTGTTTTCCCAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'30-31,'30-29,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(14.0=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTCATGACAGCGGTCTT
R:
GGTGACGCCTTAATGACCCAG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]